diff --git a/Hazelnupp/doxygen/Makefile b/Hazelnupp/doxygen/Makefile
new file mode 100644
index 0000000..ca92cfa
--- /dev/null
+++ b/Hazelnupp/doxygen/Makefile
@@ -0,0 +1,10 @@
+all:
+	# Copy all but the header of the readme here
+	tail ../../readme.md -n +5 > index.md
+	#
+	# Run doxygen
+	doxygen doxyfig
+	#
+	# Cleanup index.md
+	rm index.md
+
diff --git a/Hazelnupp/doxygen/doxyrun.sh b/Hazelnupp/doxygen/doxyrun.sh
deleted file mode 100755
index e525e5d..0000000
--- a/Hazelnupp/doxygen/doxyrun.sh
+++ /dev/null
@@ -1,10 +0,0 @@
-#!zsh
-
-# Copy cut readme.md from root
-tail ../../readme.md -n +5 > index.md
-
-# Run doxygen
-sudo doxygen doxyfig
-
-# Delete index afterwards to prevent people from editing it
-rm -f index.md