Added readme, license, and added frontpage to doxygen

Doxygen/doxyfig

@@ -829,7 +829,7 @@ WARN_LOGFILE           =
 # spaces. See also FILE_PATTERNS and EXTENSION_MAPPING
 # Note: If this tag is empty the current directory is searched.
 
-INPUT                  = "../Src/"
+INPUT                  = "../Src/" "index.md"
 
 # This tag can be used to specify the character encoding of the source files
 # that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
@@ -1026,7 +1026,7 @@ FILTER_SOURCE_PATTERNS =
 # (index.html). This can be useful if you have a project on for instance GitHub
 # and want to reuse the introduction page also for the doxygen output.
 
-USE_MDFILE_AS_MAINPAGE =
+USE_MDFILE_AS_MAINPAGE = index.md
 
 #---------------------------------------------------------------------------
 # Configuration options related to source browsing

Doxygen/doxyrun.sh

@@ -1 +1,9 @@
-sudo doxygen doxyfig
+# Copy repository readme here to be used as a cover page
+tail ../readme.md -n +2 > index.md
+
+# Run doxygen
+doxygen doxyfig
+
+# Cleanup index.md
+rm -f index.md
+