diff --git a/Eule/Doxygen/doxyfig b/Eule/Doxygen/doxyfig
index 9fa1d10..bfa82eb 100644
--- a/Eule/Doxygen/doxyfig
+++ b/Eule/Doxygen/doxyfig
@@ -829,7 +829,7 @@ WARN_LOGFILE           =
 # spaces. See also FILE_PATTERNS and EXTENSION_MAPPING
 # Note: If this tag is empty the current directory is searched.
 
-INPUT                  = "../Eule/" "index.md"
+INPUT                  = "../src/" "../include/Eule" "index.md"
 
 # This tag can be used to specify the character encoding of the source files
 # that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
diff --git a/Eule/Doxygen/doxyrun.sh b/Eule/Doxygen/doxyrun.sh
old mode 100644
new mode 100755
index a8ae488..a9c07e8
--- a/Eule/Doxygen/doxyrun.sh
+++ b/Eule/Doxygen/doxyrun.sh
@@ -1,3 +1,5 @@
+#!zsh
+
 # Copy repository readme here to be used as a cover page
 tail ../readme.md -n +2 > index.md