diff --git a/Eule/Doxygen/doxyrun.sh b/Eule/Doxygen/doxyrun.sh
deleted file mode 100755
index a9c07e8..0000000
--- a/Eule/Doxygen/doxyrun.sh
+++ /dev/null
@@ -1,11 +0,0 @@
-#!zsh
-
-# Copy repository readme here to be used as a cover page
-tail ../readme.md -n +2 > index.md
-
-# Run doxygen
-doxygen doxyfig
-
-# Cleanup index.md
-rm -f index.md
-
diff --git a/Eule/Doxygen/.gitignore b/Eule/doxygen/.gitignore
similarity index 100%
rename from Eule/Doxygen/.gitignore
rename to Eule/doxygen/.gitignore
diff --git a/Eule/doxygen/Makefile b/Eule/doxygen/Makefile
new file mode 100644
index 0000000..7a1bb4f
--- /dev/null
+++ b/Eule/doxygen/Makefile
@@ -0,0 +1,10 @@
+all:
+	# Copy all but the header of the readme here
+	tail ../../readme.md -n +2 > index.md
+	#
+	# Run doxygen
+	doxygen doxyfig
+	#
+	# Cleanup index.md
+	rm index.md
+
diff --git a/Eule/Doxygen/doxyfig b/Eule/doxygen/doxyfig
similarity index 100%
rename from Eule/Doxygen/doxyfig
rename to Eule/doxygen/doxyfig
diff --git a/Eule/Doxygen/readme.md b/Eule/doxygen/readme.md
similarity index 100%
rename from Eule/Doxygen/readme.md
rename to Eule/doxygen/readme.md